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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015915041.1_cds_XP_016464960.1_57953
CDS Infomation

[gene=LOC107787860] [db_xref=GeneID:107787860] [protein=probable pectate lyase 4] [protein_id=XP_016464960.1] [location=join(15375..15615,17793..18144,18223..18433,18571..18639,20493..20711)] [gbkey=CDS]
Sequence

ATGGGGAACCACCATACCCGTTACAAACACCACCATCACCATCAACAAGAAACCTCATTT
CCTGTTCCTCCAATACCCACAGCTCAATCCCAGAAAACAGTGAGTACCCAAATGGGTTTG
GTTTTGCCTTATGGTCAAGTTGACTCTAGCTTGTGTGGTCTAGCTGGTCAAGCTGAAGGC
TTTGGTGCTTCTTCCATTGGTGGTCGTGATGGTCATATTTATCAAGTTATGAATCTCAAT
GATGACGGGCCAGGATCACTTCGTGATGGATGTCGTAAAAAAGAACCTCTATGGATCGTC
TTTGAAGTTTCAGGGACCATTGAGCTCCGATCTTATTTGAGTGTGTCGTCTTACAAAACT
ATTGATGGGCGAGGCCAAAGAATCAAAATCACAGGGAAAGGTTTGAGGTTGAAAGAGTGT
GAACATGTGATCATCTGCAATATAGAGTTTGAGGGAGGCAGAGGACCCGATGTTGACGCC
ATTCAGATTAAACCAAAGTCAAGGCATATTTGGATAGACCGTTGTAGCCTTAGCGACTAT
GACGATGGTTTAATTGACATCACAAGGGAGAGCACAGATATTACTGTTTCTAGGTGTCAC
TTTTCAAAGCATGATAAGACCATGCTTATTGGAGCAGATCCTTCTAATTGTACCGACAGA
TGTATGCGGGTCACCATTCACCACTGCTTTTTTGATGGAACTAGACAGCGGCATCCTCGT
GTTAGATTTGGCAAAGTACATTTGTACAACAACTACACCAGGAACTGGGGAATTTATGCT
GTTTGCGCAAGTGTAGAATCACAGATATATTCCCAATGCAACATATATGAAGCTGGACAA
AAAAAGGTGGCATTTAAATATCTCACAGAGAAGGCAGCTGACAAAGAGGAAGGATGCACT
GGTAGCATTAAATCTGAAGATGACTTGTTTGTCTCTGGAACTCAGGCTGGTTTGTTGTCT
ACTTGCAGCAAAAGTAACATCTTCAATCCATCCGACTTCTACCGACACTGGACTGTAGAA
CATCCGAGTGATGCTCTCAAACACTACCTTCAACACTGTACAGGATGGCAGAGTATCCCG
CGGCCAAATTGA

Peptide Sequence

PEP ID

XP_016464960.1
PEP Infomation

PREDICTED: probable pectate lyase 4 [Nicotiana tabacum]
Sequence

MGNHHTRYKHHHHHQQETSFPVPPIPTAQSQKTVSTQMGLVLPYGQVDSSLCGLAGQAEG
FGASSIGGRDGHIYQVMNLNDDGPGSLRDGCRKKEPLWIVFEVSGTIELRSYLSVSSYKT
IDGRGQRIKITGKGLRLKECEHVIICNIEFEGGRGPDVDAIQIKPKSRHIWIDRCSLSDY
DDGLIDITRESTDITVSRCHFSKHDKTMLIGADPSNCTDRCMRVTIHHCFFDGTRQRHPR
VRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKVAFKYLTEKAADKEEGCT
GSIKSEDDLFVSGTQAGLLSTCSKSNIFNPSDFYRHWTVEHPSDALKHYLQHCTGWQSIP
RPN

Transcript Sequence

Gene sequence data has not been registered.